BLAST sequence homology search for human adenovirus typing with the two step molecular typing scheme, for use
with 5´end generic PCR sequences and loop2 (L2) sequences of the hexon gene

Albert Heim, Institut für Virologie, Medizinische Hochschule Hannover, Hannover, Germany

BLAST parameters: Program Database

Your query sequence :

Test sequence:
            1 ctcttgctag attctctggg tgacagaacc agatacttta gcatgtggaa ctctgcggtg
       61 gacagctatg atcccgatgt caggatcatt gagaatcacg gtgtggaaga tgaacttccc
      121 aactattgct tcccattgga tggctctggc accaatgccg cctatcaagg tgtaaaggtg
      181 acagaaggtg aggatggagc tgaggaaagc gaatgggaac ttgaaaacaa actcgctgcc
      241 cgtaaccaaa tatgcaaggg caacatctat gccatggaga tcaacctcca

Do not forget to change the database to DNA or to use blastx (against the protein database)

Further BLAST parameters: Expect (E) Cutoff (S) Matrix (M)

Strand Genetic code

View results here online or EMail the results to me
enter your e-mail address, and verify it is correct !
NOTE : TblastX doesn't work for the moment with the nr database (due to the size of this database).

Regulating output:

Descriptions (V) Alignments (B) Sorting
Histogram (H) Text output (remove the HTML parser)
Your query sequence's comments (optional):

Detailed description of the official taxonomy of adenoviruses. For summary, see the short list.

Citation:

Madisch I, Harste G, Pommer H, Heim A (2005) Phylogenetic analysis of the main neutralization and hemagglutination determinants of all human adenovirus prototypes as a basis for molecular classification and taxonomy. J Virol 79 (24) 15265-15276

Benkö M, Harrach B, Both GW, Russell WC, Adair BM, Adam E, de Jong JC, Hess M, Johnson M, Kajon A, Kidd AH, Lehmkuhl HD, Li Q.-G, Mautner V, Pring-Akerblom P, Wadell G (2005) Family Adenoviridae. Fauquet CM, Mayo MA, Maniloff J, Desselberger U, Ball LA (eds): Virus Taxonomy. VIIIth Report of the International Committee on Taxonomy of Viruses. Elsevier, New York pp 213-228

Comments & suggestions:
     Database - Albert Heim
     Program/cgi - Peter Elö (elo-discardthispart-@vmri.hu), Marcell Gal
     Web page - Balazs Harrach
The excellent blast program was provided by NCBI.
Server: Veterinary Medical Research Institute, Hungarian Academy of Sciences, Budapest, Hungary

BLAST sequence homology search for human adenovirus typing with the two step molecular typing scheme, for use with 5´end generic PCR sequences and loop2 (L2) sequences of the hexon gene

BLAST sequence homology search for human adenovirus typing with the two step molecular typing scheme, for use
with 5´end generic PCR sequences and loop2 (L2) sequences of the hexon gene