adenoseq

Available adenovirus sequences

Family    Adenoviridae

          Genus     Mastadenovirus     (only from mammals)

          Genus     Aviadenovirus        (only from birds)

          Genus     Atadenovirus          (snakes, lizards, birds, ruminants, brushtail possum)

          Genus     Siadenovirus          (frog, birds, Sulawesi tortoise)

          Genus     Ichtadenovirus        (fish)

Harrach B, Benkő M, Both GW, Brown M, Davison AJ, Echavarría M, Hess M, Jones MS, Kajon A, Lehmkuhl HD, Mautner V,

Mittal SK, Wadell G (2011) Family Adenoviridae. King AMQ, Adams MJ, Carstens EB, Lefkowitz EJ (eds) 
Virus Taxonomy: Classification and Nomenclature of Viruses. Ninth Report of the International Committee on Taxonomy of Viruses.

Elsevier, San Diego pp 125-141

Official species names are shown in magenta and bold (the word "adenovirus" omitted), candidate species are magenta

not bold or green (bold) if accepted by the Executive Committee of ICTV and waiting for final ICTV voting.

Own publication: P, 3D structure still: 3d, movable: 3D [needs e.g., RasMol]. Human adenovirus recombinants are

shown as (hexon/fiber types). Further abbreviations and notes are below the table.

Wikipedia links to the more exotic hosts

                           panadenovirus

PCR

                 P                                        <<<<P>>>     P   P                 P  P,P       P

                                                                  3d  3d  3d

                                     3D         3D                    3D  3D 3D                 3D,3D

Mast          ITR E1a b IX IVa pol pTP VA 52 pIIIa III pVII V pX pVI II 23 DBP 100 33 pVIII E3  IV  E4  ITR

Bovine A    B1   +   +  +  +  +   +   +   -  +   +   +    +   +  +  +  +   +  +   +   +   +   +   +  +    +  P

Bovine B    B3   +   +  +  +  +   +   +   -  +   +   +   +    +  +  +  +   +  +   +   +   +   +   +  +    +

Bovine C    B10  +   ^  ^  ^  ^   ^   ^   -  ~   ~   ^   ^   ^  ^  ^   +   +  +   +   +   +   +   +  +    +  P P

Canine      C1   +   +  +  +  +   +   +   -  +   +   +   +   +  +  +   +   +  +   +   +   +   +   +  +    +  P

            C2   +   +  +  +  +   +   +   -  +   +   +   +   +  +  +   +   +  +   +   +   +   +   +  +    +

Equine A    E1   +   +  +  +  +   +   +   1  +   +   +   +   +  +  +   +   +  +   +   +   +   +   +  +    +

Equine B    E2          ~     ~   ~   ~   -                        ~   +   +  ~   ~

Human A H12 + + + + + + + 1 + + + + + + + + + + + + + + + + +

H18 + + + + + + + 1 + + + + + + + + + + + + + + + + +

H31 + + + + + + + 1 + + + + + + + + + + + + + + + + +

HAdV MZ + + + + + + + 1 + + + + + + + + + + + + + + + + +

Western chimp 8 ~

Human B H3 + + + + + + + 2 + + + + + + + + + + + + + + + + +

H7 + + + + + + + 2 + + + + + + + + + + + + + + + + +

H16 + + + + + + + 2 + + + + + + + + + + + + + + + + +

H21 + + + + + + + 2 + + + + + + + + + + + + + + + + +

H11 + + + + + + + + + + + + + + + + + + + + + + + + +

H14 + + + + + + + + + + + + + + + + + + + + + + + + +

H34 + + + + + + + + + + + + + + + + + + + + + + + + +

H35 + + + + + + + + + + + + + + + + + + + + + + + + +

H50 + + + + + + + + + + + + + + + + + + + + + + + + +

H55?(hex11/fib14)+ + + + + + + + + + + + + + + + + + + + + + + + +

S21 + + + + + + + + + + + + + + + + + + + + + + + + +

S27.1ch + + + + + + + + + + + + + + + + + + + + + + + + +

S27.2go + + + + + + + + + + + + + + + + + + + + + + + + +

S28.1ch + + + + + + + + + + + + + + + + + + + + + + + + +

S28.2go + + + + + + + + + + + + + + + + + + + + + + + + +

S29ch + + + + + + + + + + + + + + + + + + + + + + + + +

S32ch + + + + + + + + + + + + + + + + + + + + + + + + +

S33ch + + + + + + + + + + + + + + + + + + + + + + + + +

S35.1ch + + + + + + + + + + + + + + + + + + + + + + + + +

S35.2bo + + + + + + + + + + + + + + + + + + + + + + + + +

S41.1go + + + + + + + + + + + + + + + + + + + + + + + + +

S46go + + + + + + + + + + + + + + + + + + + + + + + + +

S47go + + + + + + + + + + + + + + + + + + + + + + + + +

gorilla B7 ~ + + + + + + + + + ~

Western lowland gorilla 2 ~

Western lowland gorilla 3 ~

mountain gorilla 4 ~

mountain gorilla 5 ~

Human C B9 ^

H1 + + + + + + + 2 + + + + + + + + + + + + + + + + +

H1 from cat ~ P

H2 + + + + + + + 2 + + + + + + + + + + + + + + + + +

H5 + + + + + + + 2 + + + + + + + + + + + + + + + + +

H6 + + + + + + + 2 + + + + + + + + + + + + + + + + +

H57? (57/6) + + + + + + + + + + + + + + + + + + + + + + + + +

S31.1ch + + + + + + + + + + + + + + + + + + + + + + + + +

S34ch + + + + + + + + + + + + + + + + + + + + + + + + +

S40.1ch + + + + + + + + + + + + + + + + + + + + + + + + +

S42.1bo + + + + + + + + + + + + + + + + + + + + + + + + +

S43go + + + + + + + + + + + + + + + + + + + + + + + + +

S44bo + + + + + + + + + + + + + + + + + + + + + + + + +

S45go + + + + + + + + + + + + + + + + + + + + + + + + +

Chimp ChAd3 + + + + + + + + + + + + + + + + + + + + + + + + +

Chimp seq62 + + + + + + + + + + + + + + + + + + + + + + + + +

Chimp seq63 + + + + + + + + + + + + + + + + + + + + + + + + +

Human D H8 + + + + + + + 2 + + + + + + + + + + + + + + + + +

H9 + + + + + + + 2 + + + + + + + + + + + + + + + + +

H10 + ~ ~ 2 ~ +

H13 ~ ~ 2 ~ +

H15 + + + + + + + 2 + + + + + + + + + + + + + + + + +

H17 + + + + + + + 2 + + + + + + + + + + + + + + + + +

H19 + + + + + + + 2 + + + + + + + + + + + + + + + + +

H20 ~ ~ 2 ~ +

H22 + + + + + + + 2 + + + + + + + + + + + + + + + + +

            H23                   ~   ~   2  ~                         +

            H24                   ~   ~   2  ~                         +

            H25                   ~   ~   2  ~                         +

            H26  +   +  +  +  +   +   +   2  +   +   +   +   +  +  +   +   +  +   +   +   +   +   +  +    +

            H27                   ~   ~   2  ~                         +

            H28  +   +  +  +  +   +   +   2  +   +   +   +   +  +  +   +   +  +   +   +   +   +   +  +    +

     H29 (15/29) +   +  +  +  +   +   +   2  +   +   +   +   +  +  +   +   +  +   +   +   +   +   +  +    +

            H30                   ~   ~   2  ~                         +

            H32                   ~   ~   2  ~                         +

            H33                   ~   ~   2  ~                         +

            H36  +   +  +  +  +   +   +   2  +   +   +   +   +  +  +   +   +  +   +   +   +   +   +  +    + P

            H37  +   +  +  +  +   +   +   2  +   +   +   +   +  +  +   +   +  +   +   +   +   +   +  +    +

            H38                   ~   ~   2  ~                         +

            H39                   ~   ~   2  ~                         +

            H42                   ~   ~   2  ~                         +

            H43                   ~   ~   2  ~                         +

            H44                   ~   ~   2  ~                         +

            H45                   ~   ~   2  ~                         +

            H46  +   +  +  +  +   +   +   2  +   +   +   +   +  +  +   +   +  +   +   +   +   +   +  +    +

            H47                   ~   ~   2  ~                         +

            H48  +   +  +  +  +   +   +   2  +   +   +   +   +  +  +   +   +  +   +   +   +   +   +  +    +

            H49  +   +  +  +  +   +   +   2  +   +   +   +   +  +  +   +   +  +   +   +   +   +   +  +    +

            H51                   ~                                    +

      H53 (22/8) +   +  +  +  +   +   +   2  +   +   +   +   +  +  +   +   +  +   +   +   +   +   +  +    + P

            H54  +   +  +  +  +   +   +   2  +   +   +   +   +  +  +   +   +  +   +   +   +   +   +  +    +

H56? (15/9) + + + + + + + 2 + + + + + + + + + + + + + + + + +

H58? + + + + + + + 2 + + + + + + + + + + + + + + + + +

H59? (25/9) + + + + + + + 2 + + + + + + + + + + + + + + + + +

H60? (22/60) + + + + + + + 2 + + + + + + + + + + + + + + + + +

H62? + + + + + + + 2 + + + + + + + + + + + + + + + + +

Eastern chimp 10 ~

mountain gorilla 3 ~

Human E H4 + + + + + + + 2 + + + + + + + + + + + + + + + + +

S22 + + + + + + + 2 + + + + + + + + + + + + + + + + +

S23 + + + + + + + 2 + + + + + + + + + + + + + + + + +

S24 + + + + + + + 2 + + + + + + + + + + + + + + + + +

S25 + + + + + + + 2 + + + + + + + + + + + + + + + + +

S26ch + + + + + + + + + + + + + + + + + + + + + + + + +

S30ch + + + + + + + + + + + + + + + + + + + + + + + + +

S36ch + + + + + + + + + + + + + + + + + + + + + + + + +

S37.1ch + + + + + + + + + + + + + + + + + + + + + + + + +

S37.2bo + + + + + + + + + + + + + + + + + + + + + + + + +

S38ch + + + + + + + + + + + + + + + + + + + + + + + + +

S39ch + + + + + + + + + + + + + + + + + + + + + + + + +

Chimp ChAd6 + + + + + + + + + + + + + + + + + + + + + + + + +

Chimp seq65 + + + + + + + + + + + + + + + + + + + + + + + + +

Eastern chimp 1 ~

Eastern chimp 11 ~

Eastern chimp 12 ~

Eastern chimp 13 ~

Eastern chimp 14 ~

Weastern chimp 5 ~

Human F H40 + + + + + + + 1 + + + + + + + + + + + + + + 2 + +

H41 + + + + + + + 1 + + + + + + + + + + + + + + 2 + +

Eastern chimp 3 ~

Western lowland gorilla 1 ~

Human G H52 + + + + + + + 1 + + + + + + + + + + + + + + 2 + + P

S1cy + + + + + + + 1 + + + + + + + + + + + + + + 2 + + P

S2rh ~

S7rh + + + + + + + 1 + + + + + + + + + + + + + + 2 + +

S11rh ~

S12rh

S15rh o o o o o o o o o o o o o o o o o o o o o o 2 o o

     Macaca fascicularis 1                                             ~

rhesus 1 ~

Simian A S3rh + + + + + + + 1 + + + + + + + + + + + + + + + + + P

S4rh ~

S6rh + + + + + + + 1 + + + + + + + + + + + + + + + + +

S9 ~

S10 ~

S14rh ~

S48cy + + + + + + + 1 + + + + + + + + + + + + + + + + +

Eastern chimp 2 ~

other SAdVs: S5

S8cy + ~ +

S13 ~

S16ve + + ~ ~ ^ ~ + ~

S17ve ^

S18ve + + + + + + + 1 + + + + + + + + + + + + + + + + +

S19 +

S20ve + + + + + + + 1 + + + + + + + + + + + + + + + + +

S49cy + + + + + + + 1 + + + + + + + + + + + + + + 2 + +

S50cy + + + + + + + 1 + + + + + + + + + + + + + + 2 + +

     cynomolgus 1                                                      +   +  +   ~

Titi monkey + + + + + + + 1 + + + + + + + + + + + + + + 2 + +

black-and-white colobus 1 ~

black-and-white colobus 2 ~

black-and-white colobus 3 ~

cotton-top tamarin ~ ~ NEW

Murine A M1 + + + + + + + - + + + + + + + + + + + + + + + + +

Murine B M2 + + + + + + + - + + + + + + + + + + + + + + + + + P

Murine C M3 + + + + + + + - + + + + + + + + + + + + + + + + +

Ovine A 02 ~

O3 o ~ ~ + ~ o P

O4 ~

O5 ~o

B2 + + + + + + + - + + + + + + + + + + + + + + + + + P

Ovine B 01 ^ ~

G2 ~

Porcine A P1 + + + ~ +

P2 o + + ~ o

P3 + + + + + + + - + + + + + + + + + + + + + + + + +

Porcine B P4 o + + + +

Porcine C P5 + + + + + + + - + + + + + + + + + + + + + + + + +

Tree shrew TS1 + + + + + + + - + + + + + + + + + + + + + + + + +

Guinea pig GP1 ~

Ovine C O6 ^ ~

Squirrel Sq1 ~ ~ P

alpaca ~ ~

bat 1 flying fox/Japan ~ ~ ~

Bat A bat 3 + + + + + + 1 + + + + + + + + + + + + + + + +

Bat B bat 2 + + + + + + + 1 + + + + + + + + + + + + + + + + + P

bat 1 (flying fox) ~ ~ ~

common noctule ~ P

greater horseshoe bat ~ P

lesser horseshoe bat ~ P

grey long-eared bat ~ P

greater mouse-eared bat ~

lesser Asiatic yellow bat         ~

Rickett's Big-footed Bat ~

Great Roundleaf Bat ~

Horsfield's Bat ~

unknonw bat species/USA ~

Rabbit ~

Sea lion (Californian) ~

(South American) ~

Harbour porpoise ~ NEW

Avi           ITR parvo-NS1 IVa pol pTP    52 pIIIa III pVII   pX pVI II 23 DBP 100 33 pVIII     IV ORFs ITR

                 dUTPase ORFs

Falcon A falcon 1:

     Northern Aplomado falcon     ~                  +   +      +  +   +

     American kestrel                                                  ~

     Orange-breasted falcon                                            ~

     Teita falcon                                                      ~

Fowl A      F1   +  +  +  +   +   +   +      +   +   +   +      +  +   +   +  +   +   +   +       2  +    +

Fowl B      F5                   ~/~                                   ~                                    P

     strain 8844                                                       ~                                    P

Fowl C      F4   +  +  +  +   +   +   +      +   +   +   +      +  +   +   +  +   +   +   +       2  +    + P

            F10  +  +  +  +   ~   ~   +              +   +      +      +          +   +   +       +  +    + P

Fowl D      F2   +  +  +  +   +   ~                                    ~                             +    + P

            F3                    ~                                    ~                                    P

            F9   +  +  +  +   +   +   +      +   +   +   +      +  +   +   +  +   +   +    +      1  +    +

            F11                   ~                                    ~                                    P

Fowl E      F6                    ~                                    ~                                    P

            F7                    ~                                    ~                                    P

            F8   +  +  +  +   +   +   +      +   +   +   +      +  +   +   +  +   +   +    +      1  +    +

              F8a                 ~                                    ~          ~   +    +      1  +    + P

              F8b                 ~                                    ~                                    P

Goose       Go1                   ^                                    ^

            Go2                                                        ^

            Go3                                                        ^

Go4 ^ o

Duck B      D2                    ^                                    ^

Pigeon      Pi1                                                        ~                          ^

Turkey B    T1   +  +  +  +   +   +   +      +   +   +   +      +  +   +   +  +   +   +    +      2   +   + P

T2                                ^                                    ~                                    P

T4

Meyer's parrot                    ~

Psittacine  Ps1                                                        ~

At             ITR  LH1+2   IVa pol pTP    52 pIIIa III pVII   pX pVI II 23 DBP 100 33 pVIII    IV E4    ITR

                   32K   LH3                                                                        RH-ORFs

Ovine D     O7   +  +  +  +   +   +   +      +   +   +    +     +  +   +   +  +   +   +    +      +  +  + +

            G1                                                         ~

Duck A   D1/EDS  +  +  +  -   +   +   +      +   +   +    +     +  +   +   +  +   +   +    +      +  +  + + P

Bovine D    B4   +  +  +  +   +   +   +      +   +   +    +     +  +   +   +  +   +   +    +      +  +  + + P

            B5   +                                                     ~                                  + P

            B8                                                         ~   ^

     strain Rus  +  +  ~  o   o   o   o      o   o   o    o     o  o   o   o  o   o   o    o      o  o  o + P P

Bovine E    B6                    o                                o    ~   o                                P

Bovine F    B7                    ~                                    ~   +

Possum      Po1                   ^                  +    ^            +   +                                P

Snake A     Sn1  +  +  +  +   +   +    +     +   +   +    +     +  +   +   +  +   +   +    +      +  +  + + P

  (corn snake, boa, python)                                                                                 P

  corn snake strain GER09         ~                                                                         P

Cervine     Od1          ~                       ~                     ~                   ~      +

Chameleon (mountain chameleon)    ~                                                                         P

Gecko (Eublepharid, Ge1)          ~                                                                         P

       (fat-tailed gecko)

agamid (bearded dragon)           ~                                    ~                                    P

gekkonid (tokay gecko)            ~                                                                         P

gila 1                            ~                                                                         P

Mexican beaded lizard             ~                                                                         P

scincid (blue-tongued skink)      ~                                                                         P

asp viper                         ~                                                                         P

viperid (Parias hageni)           ~

snake 2                           ~

snake 3                           ~

emerald monitor (varanid)         ~                                                                         P

Si            ITR sial ORF4 IVa pol pTP    52 pIIIa III pVII   pX pVI II 23 DBP 100 33 pVIII E3 IV ORF7  ITR

                  hydrophobic                                                                       ORF8

Frog     Fr1     +  +  +  -   +   +   +      +   +   +    +     +  +   +   +  +   +   +    +  +   +  +  + + P

Raptor A owl,hawk+  +  +  +   +   +   +      +   +   +    +     +  +   +   +  +   +   +    +  +   +  +  + + P P P

Turkey A T3/THEV +  +  +  +   +   +   +      +   +   +    +     +  +   +   +  +   +   +    +  +   +  +  + +

         MSDV                                                          ^   o  ^            o

Great tit A GT1                 ~    +   +      +   +   +    +     +  +   ~                                    P

South Polar skua +  +  +  +   +   +   +      +   +   +    +     +  +   +   +  +   +   +    +  +   +  +  + + NEW

psittacine 2                      ~

   (plum headed parakeet,

   umbrella cockatoo, etc.)

Sulawesi tortoise                 ~

budgerigar                                                             ~

Icht

Sturgeon A  WS1  o  -  -  -   o   ~    o  -   o   o   o    o     o  o  +   +  o   o   o    -  -   -  -  - o P P

unassigned

box turtle                        ~

Serotypes, even from different hosts, are grouped into species, according to calculated phylogenetic distance,

restriction enzyme fragmentation, DNA hybridization, GC content, cross-neutralization, possibility of recombination,

hemagglutination, and oncogenic potential. E.g., most chimpanzee AdVs and human adenovirus 4 are so similar that

they are just different members of species Human adenovirus E. The serotypes often have different strains/variants,

but we do not show more than one from each serotype (from a single host).   Taxonomy          Short list

Signs: + full gene sequence available

       o full gene sequence not released yet

       ~ partial gene sequence available

       ^ partial gene sequence not released yet

       - corresponding gene is missing from the genome

       l = long, s = short fiber (HAdV-40, HAdV-41, FAdV-1)

       U unique genome region for EDS (containing one VA gene homologous to that of FAdV-1)

Comment: Some genes were sequenced and submitted in multiple parts, thus they are referred

in this table with close but divided ~ ~ signs.

Abbreviations for host species: B: bovine, Bt: bat, C: canine, Cp: caprine, D: duck, E: equine, F: fowl,

Fr: frog, G: goat Go: goose, GP: guinea pig, H: human, M: murine, O: ovine, Od: Odocoileus (black-tailed deer),

P: porcine, Pi: pigeon, S: simian (SAdV-1 to 20 are from old world monkeys, 21 to 25 from chimpanzee),

Sn: Snake, Sq: squirrel, T: turkey, TS: tree shrew (tupaia), WS: white sturgeon,bo: bonobo (pigmy chimpanzee,

Pan paniscus) ch: chimpanzee (Pan troglodytes), cy: cynomolgus monkey (Macaca fascicularis),

go: gorilla, rh: rhesus macaque (Macaca mulatta), ve: vervet monkey (Chlorocebus pygerythrus).

Remember: Human adenovirus 5 is not Ad5 as there are animal serotype 5 AdVs, e.g. BAdV-5, FAdV-5, OAdV-5, SAdV-5; and species

Human adenovirus C is not 'adenovirus species C' as also other AdV species have C in their names (Fowl adenovirus C, Bovine adenovirus C, etc.).

New proposals accepted by the Executive Committee of ICTV but still lacking final electronic vote (it will be done by the 20th of February, 2012)

  2011:

        1. Create species Bat adenovirus B and Murine adenovirus B (for bat AdV-2 and MAdV-2, respectively) in genus Mastadenovirus

        2. Create species Turkey adenovirus B (for turkey AdV-1) in genus Aviadenovirus

        3. Create species Great tit adenovirus A (for great tit AdV-1) in genus Siadenovirus

  2010:

      1. Create species named Bat adenovirus A (for bat AdV-3) in genus Mastadenovirus

      2. Rename 5 species in the family Adenoviridae by adding letter designation

           (Possum adenovirus A, Goose adenovirus A, Canine adenovirus A, Tree shree adenovirus A,

           Frog adenovirus A)

Open positions for early stage researchers (i.e., PhD fellows; less than 4 years after finishing the University)
and experienced researchers (i.e. post-docs):

10th International Adenovirus Meeting - near Umea, Sweden, 13-17 June 2012

Workshop on human adenovirus - Sapporo, Japan, 13 Sept 2011

program   (proceedings in press)

9th International Adenovirus Meeting - Dobogókő, Hungary, 26-30 April 2009

     Participants    Programme   Book of Abstracts  (1.2 MB)

Started by Balázs Harrach, Tibor Papp, Márta Lörincz, Szilvia L. Farkas.

Last update by Balazs Harrach on Jan 25, 2012.

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